Species lettercodes
Protein names (e.g. in download and phylogenetic trees) are extended by a (typically five) letter code abbreviating the species, e.g. ORYSA = ORYza SAtiva. Please see the table below for the alphabetically sorted codes.
| Lettercode | Species | Dataset |
|---|---|---|
| ACTCH | Actinidia chinensis | Genome |
| AEGTA | Aegilops tauschii | Genome |
| AETARV25 | Aethionema arabicum | Genome |
| AMAHYnew | Amaranthus hypochondriacus | Genome |
| AMBTR | Amborella trichopoda | Genome |
| AQUCOnew | Aquilegia coerulea | Genome |
| ARAALwo | Arabis alpina | Genome |
| ARALY | Arabidopsis lyrata | Genome |
| ARATH | Arabidopsis thaliana | Genome |
| AZAIN | Azadirachta indica | Genome |
| AZOFI | Azolla filiculoides | Genome |
| BATPR | Bathycoccus prasinos | Genome |
| BETVUREFBEETnew | Beta vulgaris | Genome |
| BOESTnew | Boechera stricta | Genome |
| BRADIwonew | Brachypodium distachyon | Genome |
| BRAOL | Brassica oleracea | Genome |
| BRARA | Brassica rapa | Genome |
| BRASTnew | Brachypodium stacei | Genome |
| CAJCA | Cajanus cajan | Genome |
| CALTU | Calliarthron tuberculosum | Genome |
| CAMSA | Camelina sativa | Genome |
| CANSA | Cannabis sativa | Genome |
| CAPANcvGLABRIUSCULUM | Capsicum annuum (spp. glabriusculum) | Genome |
| CAPANcvZUNLA | Capsicum annuum (spp. zunla) | Genome |
| CAPGRnew | Capsella grandiflora | Genome |
| CAPRUnew | Capsella rubella | Genome |
| CARPA | Carica papaya | Genome |
| CERPUGG1tr_m240lflr | Ceratodon purpureus | Transcriptome |
| CHABR | Chara braunii | Genome |
| CHAGLtr_m240lflr | Chaetosphaeridium globosum | Transcriptome |
| CHLATtr_m240lflr | Chlorokybus atmophyticus | Transcriptome |
| CHLRE | Chlamydomonas reinhardtii | Genome |
| CHLSP | Chlorella sp. NC64A | Genome |
| CHLVU | Chlorella vulgaris | Genome |
| CHOCR | Chondrus crispus | Genome |
| CICARnew | Cicer arietinum | Genome |
| CITCL | Citrus clementina | Genome |
| CITLA | Citrullus lanatus | Genome |
| CITSI | Citrus sinensis | Genome |
| COCSP | Coccomyxa subellipsoidea C-169 | Genome |
| COFCA | Coffea canephora | Genome |
| COLORtr_m240lflr | Coleochaete orbicularis | Transcriptome |
| COLSPtr_m240lflr | Coleochaete sp. | Transcriptome |
| CUCME | Cucumis melo | Genome |
| CUCSA | Cucumis sativus | Genome |
| CYACA | Cyanidium caldarium | Genome |
| CYAME | Cyanidioschyzon merolae | Genome |
| CYAPA | Cyanophora paradoxa | Genome |
| ELAGU | Elaeis guineensis | Genome |
| ERATE | Eragrostis tef | Genome |
| EUCGRnew | Eucalyptus grandis | Genome |
| EUTSA | Eutrema salsugineum | Genome |
| FRAVE | Fragaria vesca | Genome |
| FUNHY15tr_m240lflr | Funaria hygrometrica | Transcriptome |
| GALPH | Galdieria phlegrea | Genome |
| GALSU | Galdieria sulphuraria | Genome |
| GINBI | Ginkgo biloba | Genome |
| GLYMA | Glycine max | Genome |
| GONPE | Gonium pectorale | Genome |
| GOSRA | Gossypium raimondii | Genome |
| GRACH | Gracilariopsis chorda | Genome |
| HORVUHC | Hordeum vulgare | Genome |
| JATCU | Jatropha curcas | Genome |
| KLEFLv1.1 | Klebsormidium flaccidum | Genome |
| LEAALwo | Leavenworthia alabamica | Genome |
| LINUS | Linum usitatissimum | Genome |
| LOTJA | Lotus japonicus | Genome |
| MALDO | Malus domestica | Genome |
| MANESnew | Manihot esculenta | Genome |
| MARPOtr_m240lflr | Marchantia polymorpha | Transcriptome |
| MARPOv3.1 | Marchantia polymorpha | Genome |
| MEDTR | Medicago truncatula | Genome |
| MICPUCCMP | Micromonas pusilla CCMP1545 | Genome |
| MICPURCC299 | Micromonas sp. RCC299 | Genome |
| MIMGU | Mimulus guttatus | Genome |
| MUSACnew | Musa acuminata | Genome |
| MUSBA | Musa balbisiana | Genome |
| NELNU | Nelumbo nucifera | Genome |
| NICBE | Nicotiana benthamiana | Genome |
| NITHYtr_m240lflr | Nitella hyalina | Transcriptome |
| ORYSAINDI | Oryza sativa (spp. indica) | Genome |
| ORYSAJAPON | Oryza sativa (spp. japonica) | Genome |
| OSTLU | Ostreococcus lucimarinus | Genome |
| OSTTA | Ostreococcus tauri | Genome |
| OSTTARCC809 | Ostreococcus sp. RCC809 | Genome |
| PANVInew | Panicum virgatum | Genome |
| PENMAtr_m240lflr | Penium margaritaceum | Transcriptome |
| PHAEQ | Phalaenopsis equestris | Genome |
| PHAVU | Phaseolus vulgaris | Genome |
| PHODA | Phoenix dactylifera | Genome |
| PHYHEnew | Phyllostachys heterocycla | Genome |
| PHYPA33 | Physcomitrella patens | Genome |
| PICABHC | Picea abies | Genome |
| PICGLtr_m240lflr | Picea glauca | Transcriptome |
| PINTA | Pinus taeda | Genome |
| POPTR | Populus trichocarpa | Genome |
| PORCRtr_m240lflr | Porphyridium cruentum | Transcriptome |
| PORPU | Porphyridium purpureum | Genome |
| PORUM | Porphyra umbilicalis | Genome |
| PRUMU | Prunus mume | Genome |
| PRUPE | Prunus persica | Genome |
| PTEAQtr_m240lflr | Pteridium aquilinum | Transcriptome |
| PYRBR | Pyrus bretschneideri | Genome |
| PYRCO | Pyrus communis | Genome |
| PYRYE | Pyropia yezoensis | Genome |
| RAPRA | Raphanus raphanistrum | Genome |
| RAPSA | Raphanus sativus | Genome |
| RICCO | Ricinus communis | Genome |
| SALCU | Salvinia cucullata | Genome |
| SELMO | Selaginella moellendorffii | Genome |
| SETITnew | Setaria italica | Genome |
| SETVInew | Setaria viridis | Genome |
| SISIRwo | Sisymbrium irio | Genome |
| SOLLYnew | Solanum lycopersicum | Genome |
| SOLME | Solanum melongena | Genome |
| SOLPE | Solanum pennellii | Genome |
| SOLTUnew | Solanum tuberosum | Genome |
| SORBI | Sorghum bicolor | Genome |
| SPIPO | Spirodela polyrhiza | Genome |
| SPIPRtr_m240lflr | Spirogyra pratensis | Transcriptome |
| SPISP | Spirogyra sp. | Genome |
| TARHA | Tarenaya hassleriana | Genome |
| THECA | Theobroma cacao | Genome |
| THEPA | Thellungiella parvula | Genome |
| TRIAE | Triticum aestivum | Genome |
| TRIUR | Triticum urartu | Genome |
| UTRGI | Utricularia gibba | Genome |
| VITVI | Vitis vinifera | Genome |
| VOLCAnew | Volvox carteri | Genome |
| ZEAMA | Zea mays | Genome |
| ZOSMAnew | Zostera marina | Genome |