Domain: VARL

HMM file

Alignment

CLUSTAL 2.1 multiple sequence alignment


CHLRE_Cre14.g617151.t1.2_92.9_ -GKLT-LGVVGVFHPQLYMKGGDCIE---VNGKMISRGRFEKLAGTATAK
CHLRE_Cre14.g617200.t1.1_85.3_ -GKLT-LGVVGVFYPEIYIKGGDCIE---LNGKMISRGRFEKLAGSATAK
VOLCA_Vocar20001298m_89.7_1 -SKIT-RGAVGLFHPQLYLSGGNCIE---CGNEMMSRGKFERLAGTATAK
VOLCA_Vocar20001243m_84.6_1 --GVT-RGAVGLFHPQLYLSGGNCIE---CGNEMMSRGKFERLAGTATAK
CHLRE_Cre10.g418600.t1.1_77.6_ -GLVPYREVYGTFHPGPYLRNKECIE---HDGRMITRGHFERLGGTATAK
CHLRE_Cre17.g738600.t1.1_112.2 -AAVG-GKVVGVFHVLPYLEGGKCIE---YDGELISRSAFERVGGSTMAK
CHLRE_Cre17.g738632.t1.2_71.8_ ------------------MEGGKCIE---YDGELISRSAFERVGGSTMAK
CHLRE_Cre15.g643700.t1.1_111.1 -AALG-GKVLGVFYTGAYLDGGRCVE---HCGELLSRSAFERVGGSSMAK
VOLCA_Vocar20001810m_89.2_1 -QLLQ-LGNLDQLPGPPYLEGRKCID---HGGEMVSRSAFERAGGSMMAK
CHLRE_Cre09.g393654.t1.1_117.3 -ADTT-HEVFGVFHFDRYLDNRDCIE---HQGSFLSRSKFEKLGGSVMAK
CHLRE_Cre06.g304250.t1.1_109.7 -SDLV-CEVLGLFHPRRYVEGRDCVEYPPHSGTFVSRSHFEKVGGAVTAK
VOLCA_Vocar20003078m_225.3_1 -GYMR-GHACGVFDVPRYLAGRDCIH---NGSKWMSRSQFEKVGGSKMAK
VOLCA_Vocar20003248m_190.9_1 -GYAP-GPVRGRFDVPRYLAGRDCIF---HNGRWMSRSNFERVGGSKMAK
VOLCA_Vocar20003235m_219.0_1 -GYLR-GPACGVFDLTRYLTGRDCVR---HCGRWISRSQFEKVGGSTMAK
CHLRE_Cre17.g709800.t1.2_218.9 -GYVK-GHAVGLFQPQLYLARMDCIR---YKGINVSRSNFEKVGGSNMAK
VOLCA_Vocar20015170m_195.0_1 -SYVR-GPACGVFEPALYMSRMDCIR---YHGQLISRSHFEKIGGSNMAK
VOLCA_Vocar20004274m_123.5_1 --FVA-GIVRGTFHPDLYMCSQDCIT---FKGKRIGRSKFEKLGNSSMAK
VOLCA_Vocar20012923m_124.9_1 ----K-PPVFGMFYPDRYMVGVDCIL---VDGMFVSRSRFEKLGGSLMAK
CHLRE_Cre09.g393284.t1.1_123.6 ----A-GNVVGLFHPDRYLKGGDCIA---CGMGMVSRSRFEKIGGSPMAK
VOLCA_Vocar20012800m_122.3_1 ---TQ-GTIYGIFHPDRYLSGEDCID---YQGNFITRSKFEKLGGSLMAK
CHLRE_Cre01.g010750.t1.2_100.4 ---AR-ITVSGVFHPDRYLANQDCIW---WNNQFVSRSRFEKEGGSTTAK
VOLCA_Vocar20009615m_89.5_1 GRRRR-LSIQGVFHPERYLANQDCIF---YENKFISRSAFEKAGGSTTAK
CHLRE_Cre06.g302150.t1.1_37.8_ -GKER-PYAEGYFDPQAYMRREPCVL---HDGEMLLPTKFEKLARS-KQR
: *: : **: . : :

CHLRE_Cre14.g617151.t1.2_92.9_ WHVSIKVLP---SGTTIGKWLQQHGLPVLQGRPRKRRA---
CHLRE_Cre14.g617200.t1.1_85.3_ WHVSIKVLP---SGTTIGKWLQQQGLPVLQGQPRAKRSTKG
VOLCA_Vocar20001298m_89.7_1 WHVSIKVLP---SGVTLGKWLQQHGLPILQGRPRRRRADSV
VOLCA_Vocar20001243m_84.6_1 WHVSIKVLP---SGVTLGKWLQQHGLPILQGRPRKRPPLEH
CHLRE_Cre10.g418600.t1.1_77.6_ WHVSIKVMP---QNLALGKWLASHGLPVLTGKPRKPRSNEV
CHLRE_Cre17.g738600.t1.1_112.2 WYRSIKVLP---DGMSLGRWLAAHKLPILKGNPRRSFKGRR
CHLRE_Cre17.g738632.t1.2_71.8_ WYRSIKVLP---EGVSLGRWLTSRGLPIIKGNPRRNQKGAK
CHLRE_Cre15.g643700.t1.1_111.1 WYRSIKVLP---DGMSLGRWLLARGMPVLKGNPRQSRRRSR
VOLCA_Vocar20001810m_89.2_1 WYRSIKVLP---EGVSLGKWLVSNGLPVLKGNPRRSKKSGG
CHLRE_Cre09.g393654.t1.1_117.3 WYRSIRVAD---TGEALGNWLERHGLPVLRGKPRTRVPKPS
CHLRE_Cre06.g304250.t1.1_109.7 WYRSIRVLP---QMEHLGDWLEAHGLQVFKGTGRKRGGRYG
VOLCA_Vocar20003078m_225.3_1 WYRSIRVLP---DLEPLGEWLERHGMPVTKGPARRSRKRAA
VOLCA_Vocar20003248m_190.9_1 WYRSIRVLP---DLEPLGEWLERHGMPVTKGPARRSSKRAA
VOLCA_Vocar20003235m_219.0_1 WYRSIRVLP---DLEPLGEWLERHGMPVLRGPARRRRRRAA
CHLRE_Cre17.g709800.t1.2_218.9 WYRSIRVMP---DLEPLGEWLERHGLPVLKGAARRSRPRRV
VOLCA_Vocar20015170m_195.0_1 WYRSIRVLP---DLEPLGEWLERHGMPVTKGPARRYRPRKQ
VOLCA_Vocar20004274m_123.5_1 WHRSIRVIREDGELEPLGEWLTRHGLPVLKGKQRISRKRTI
VOLCA_Vocar20012923m_124.9_1 WYRSIRVVD---TAEPLGAWLERHNLPVFTGKARQRRQRGA
CHLRE_Cre09.g393284.t1.1_123.6 WYRSIRVVG---SDEPLGSWLTRHGLPVHTGMARQRKPRAS
VOLCA_Vocar20012800m_122.3_1 WYRSIRVVT---TDEPLGTWLTRRGLPVLKGTSRNRKQVMA
CHLRE_Cre01.g010750.t1.2_100.4 WHCSIKVAG--DN-TALGSWLSARGLPVLKGCARKSKKQRA
VOLCA_Vocar20009615m_89.5_1 WHCSIKVAG--THAVTLGSWLNAKGLPVIKGGSRKSKRQRA
CHLRE_Cre06.g302150.t1.1_37.8_ WTIGVKVLE---TCKPIGDWLQEHGLPLTLFDHNSNSAKAI
* .::* :* ** . : : .