Domain: trihelix

HMM file

Alignment

CLUSTAL 2.1 multiple sequence alignment


POPTRwo_Potri.010G233500.1_60. WSDTAISCLLEAYTE--KFNQLN-----------RGNLRGRDWEEVAEAV
PINTA_000035666-RA_50.1_1 WSDSAIGCLLDAYTE--KYVKLN-----------RGNLRGRDWEEVACIV
POPTRwo_Potri.003G198800.1_75. WSEGATAVLIDAWGE--RYLELS-----------RGNLKQKHWKEVAEIV
PINTA_000038638-RA_90.7_1 WSQTATLTLIDAWGE--RYLELN-----------RGNLKQKHWKEVAEAV
BETVUwo_Bv8_183310_fhyg.t1_95. WSEDATFTLIEAWGQ--RYIELN-----------RGNLRQKQWQEVADSV
PHYPAV30wo_Phpat.011G081600.1. WSEAATAVLISAFRE--KFHALD-----------RNNFRSKDWGEVAKEV
PHYPAV30wo_Phpat.011G015100.1. WSETATTVLLQAFGE--KYRALD-----------RGNFTSKIWADIAARV
KLEFL_kfl00209_0150_40.5_1 WSKRATDALVESWGN--KFLQQN-----------RGNLTDLHWKEIEEEV
KLEFL_kfl00744_0040p_37.6_1 WTDNGIEGLVDVWGG--KSRKLQ-----------GGNLTAKHWDEIAFAV
KLEFL_kfl01509_0010_38.4_1 WTDNGIEALIDAWGR--RYARLK-----------GGNFTVHHWGGVAEDV
PHYPAV30wo_Phpat.003G066600.1. WIDEEVEALLDVWGD--TYIHVK-----------RENLGKRHWETVVREV
SORBIwo_Sb01g038330.1_29.8_1 WSDGETARLIDAWGP--VHLRRR-----------PRGLRLEEWRAAARAV
GLYMAwo_Glyma.16G093600.1.p_39 WTHQETVHLIRAYQE--KWYALK-----------RGPLRHNQWEEVAVVV
BRADIwo_Bradi3g38680.1_29.9_1 WSHAETMHLLDVYED--RWNKLR-----------RGQLKAQQWEDVAAET
PINTA_000019810-RA_35.0_1 WPNSAVDALLRKFED--LCFNKH-----------RGQLGKKHWDRIAAAV
SELMO_fgenesh2_pg.C_scaffold_1 WTRPETLKLIRLRTE--LEPRFAR---------TGRKTE--LWDEIAESL
RHIIR_ESA18722.1_34.1_1 WPMDATEALIRRRRY--YHNRFID---------TCVQNQGTLWQYISNHI
PHYPAV30wo_Phpat.021G062500.1. WPRAETLALIQIRSD--LDANFR-----------DSGVKGPLWEDVSRKL
AMBTR_evm_27.model.AmTr_v1.0_s WPREETLALLKIRSS--IEAGMG-----------DSNVKGPIWEHVSRKL
ORYSAJAPONwo_LOC_Os03g02240.1_ WPRQETLALLKIRSE--MDAAFR-----------EAALKGPLWEEVSRKL
PINTA_000041247-RA_120.7_1 WPRQETLALLKIRSE--MDASFR-----------DASLKGPLWEEISRKL
EUCGRwo_Eucgr.J01012.1_107.2_1 WPRQETLTLLEIRSR--LDPKFK-----------EANQKGPLWDEVSRIM
MIMGUwo_Migut.J00979.1.p_103.0 WPRQETLTLLEIRSR--LDPKFK-----------EANQKGPLWDEVSRIM
BETVUwo_Bv7_159540_ozqs.t1_103 WPRQETLTLLEIRSR--LDHKFK-----------EANQKGPLWDEVARIM
MIMGUwo_Migut.L01760.1.p_107.0 WPRQETLALLEIRSN--LDSKFK-----------EANQKGPLWDEIARIM
ORYSAJAPONwo_LOC_Os04g45750.1_ WPKTEVQALIQLRME--LDMRYQ-----------ETGPKGPLWEEISSGM
GLYMAwo_Glyma.20G166800.1.p_11 WPKTEVHALIRLRTS--LEAKYQ-----------ENGPKAPFWEDISAGM
GLYMAwo_Glyma.04G216100.1.p_95 WPKDEVEALIRLRTQ--IDVQAQWNSNN----NNNNGSKGPLWEEISSAM
POPTRwo_Potri.019G010200.1_107 WPKEEIESLIKIRTY--LEFQYQ-----------ENGPKGPLWEEISTSM
PINTA_000029613-RA_115.3_1 WPKPEIMSLIRLRTN--MERRFQ-----------EAGAKGPLWEEIASNM
ARATHwo_AT1G33240.1_123.8_1 WPKAEILALINLRSG--MEPRYQ-----------DNVPKGLLWEEISTSM
SELMO_gw1.7.440.1_103.3_1 WPRAEVQALIQLRAA--METKFQ-----------EVGPKGPFWEEISAGL
BETVUwo_Bv6_129860_ytyg.t1_100 WPKEEVEALVKIKTN--MELEFQ-----------RVGPKGPMWEEVSFAM
EUCGRwo_Eucgr.H04383.1_85.5_1 WPRDEVQALINLRCS--LNGGTNNEDHKLEGSNNNGNNRAPLWERISQKM
GLYMAwo_Glyma.20G224000.1.p_82 WPKDEVLALINLRCT--SVNNNNNEE-------KEGNNKVPLWERISQGM
DROME_FBpp0304300_41.1_1 WTTEATRALIHIRGP--MEGSFTE----------GRQKRTALWLHCTRQL
RHIIR_ERZ97714.1_37.4_1 WTHAEIRTLIDERRT--RNDEFHN----------LGRNRERFWGTIASKI
RHIIR_ESA10985.1_32.7_1 WTDPLIRTLIDERRT--RNDEFHD----------LGRNRERFWGTIASKI
PHYPAV30wo_Phpat.019G042200.1. WGYHETKQLISIRAE--LEKDF-----------ALIKRNKTLWELIERKM
SELMO_e_gw1.3.801.1_71.0_1 WGFHETKEFIAIRAE--FEREF-----------TQTKRNKTLWELIAGRM
VITVI_GSVIVT01011168001_99.6_1 WSIQETKEFLMIRAE--LDRTF-----------METKRNKLLWEVIANKM
SELMO_fgenesh2_pg.C_scaffold_2 WGHTETKDFISIRAD--MEEDP-----------SLSSQ-KNWWDPIAGKM
SORBIwo_Sb06g020670.1_110.1_1 WVREETLCLIALRRE--MDAHFN----------TSKS-NKHLWEAISARM
ARATHwo_AT1G13450.1_122.2_1 WVQDETRSLIMFRRG--MDGLFN----------TSKS-NKHLWEQISSKM
PINTA_000037500-RA_35.5_1 WKKPEIQFLIKSKIE--MQATFN----------KAIVKHETLWENISEKM
SORBIwo_Sb04g005902.1_89.4_1 WKPEEIKSLIQMRGE--MNEKF-----------QSVKGRMVLWEEISDTM
ZEAMAwo_GRMZM2G103315_P01_95.7 WKPEEIKSLIQMRGE--MNERF-----------QSVKGRMILWEEISDNM
DROME_FBpp0288372_30.7_1 FDTDETKLLIQLWGD--PKLQRT---------LITTHKKHAVICQLAAKM
DROME_FBpp0086602_30.7_1 FDTDETKLLIQLWGD--PKLQRT---------LITTHKKHAVICQLAAKM
HOMSAwo_CCDS32410.1_Hs106_chr1 WSYEETKTFLAILKESRFYETLQ-----------ACPRNSQVYGAVAEWL
: ::

POPTRwo_Potri.010G233500.1_60. SERG------GSNNKK-SVEQCKNKIDNLKKRYKVEL
PINTA_000035666-RA_50.1_1 SERCE-----RQKSAK-SIEQCKNKVDNLKKRYKSER
POPTRwo_Potri.003G198800.1_75. SSRED-----YSKSSK-TDIQCKNRIDTVKKKYKLEK
PINTA_000038638-RA_90.7_1 NGRPG-----NNKQAK-TDVQCKNRLDTLKKKYKVER
BETVUwo_Bv8_183310_fhyg.t1_95. NNRHG-----HVKKARRTDVQCKNRIDTLKKKYKIEK
PHYPAV30wo_Phpat.011G081600.1. NTHCAN-----EKTHK-TQEQCRMKVDSLKKRYRQEK
PHYPAV30wo_Phpat.011G015100.1. NSRGSLTGNLVDGIPK-TQEQCRIKVDNLKKRYKVER
KLEFL_kfl00209_0150_40.5_1 NAQLN------EAEKK-TVIQCQNKVDGLKKRYKKEK
KLEFL_kfl00744_0040p_37.6_1 SAATD---------CQVTAQQCMDKVDGLKKKYKSIK
KLEFL_kfl01509_0010_38.4_1 SALSD---------CQVTAQQCQDKLDALKRKHKKAK
PHYPAV30wo_Phpat.003G066600.1. NARLT---------HQREQPQMKNKIDSLKKRYKREK
SORBIwo_Sb01g038330.1_29.8_1 NAHRAA----AGRRFNRTRVQCQTRVRTLKQRYKEEL
GLYMAwo_Glyma.16G093600.1.p_39 AARCGYDL--AHP--AKSALQCRHKMEKLRQRHRAEK
BRADIwo_Bradi3g38680.1_29.9_1 TARCVASG--AGAGQRKTGTQCRHKLEKLRKRYRAEA
PINTA_000019810-RA_35.0_1 NVICGTD---------YTGMQCKYKWHRLKKMYNKEK
SELMO_fgenesh2_pg.C_scaffold_1 QRER----------FCRDAQQCRDKWEKLTAGYKEVR
RHIIR_ESA18722.1_34.1_1 YNNHN---------FNVTATQCRTKWNALVAGYENLK
PHYPAV30wo_Phpat.021G062500.1. -AEMG---------YNRSGKKCKEKFENIHKYYKKSK
AMBTR_evm_27.model.AmTr_v1.0_s -AELG---------FNRSAKKCKEKFENVSKYYKKTR
ORYSAJAPONwo_LOC_Os03g02240.1_ -AEMG---------YKRSAKKCREKFENVDKYYKRTK
PINTA_000041247-RA_120.7_1 -ADLG---------YQRSAKKCKEKFENVQKYYKRTK
EUCGRwo_Eucgr.J01012.1_107.2_1 SEEHG---------YNRSGKKCREKFENLYKYYKKTK
MIMGUwo_Migut.J00979.1.p_103.0 CEEHG---------YQRSGKKCREKFENLYKYYKKTK
BETVUwo_Bv7_159540_ozqs.t1_103 SEEHG---------YQRSGKKCREKFENLYKYYKKTK
MIMGUwo_Migut.L01760.1.p_107.0 CEEHG---------YQRSGKKCREKFENLYKYYKKTK
ORYSAJAPONwo_LOC_Os04g45750.1_ -RRLG---------YNRSSKRCKEKWENINKYFKKVK
GLYMAwo_Glyma.20G166800.1.p_11 -LRLG---------YNRSAKRCKEKWENINKYFKKVK
GLYMAwo_Glyma.04G216100.1.p_95 -KSLG---------YDRSAKRCKEKWENINKYFKRIK
POPTRwo_Potri.019G010200.1_107 -KNLG---------YDRSAKRCKEKWENMNKYFKRVK
PINTA_000029613-RA_115.3_1 -SRLG---------YDRSAKRCKEKWENINKYFRKAK
ARATHwo_AT1G33240.1_123.8_1 -KRMG---------YNRNAKRCKEKWENINKYYKKVK
SELMO_gw1.7.440.1_103.3_1 -ACQG---------YSRSAKRCKEKWENINKYYRKTS
BETVUwo_Bv6_129860_ytyg.t1_100 -KNSG---------YDRNAKRCKEKWENINKYYRRVK
EUCGRwo_Eucgr.H04383.1_85.5_1 -SELG---------YERSAKRCKEKWENINKYFRKTK
GLYMAwo_Glyma.20G224000.1.p_82 -LELG---------YKRSAKRCKEKWENINKYFRKTK
DROME_FBpp0304300_41.1_1 -QRLG---------FRYSAAKVQKKWHNILITYNKNL
RHIIR_ERZ97714.1_37.4_1 NQENG---------ISFSGHQCKEKFSNLVWDYNPEV
RHIIR_ESA10985.1_32.7_1 NQENG---------TSFSGHQCKEKFSNLVRDYNVSY
PHYPAV30wo_Phpat.019G042200.1. -MEKG---------FRRSADQCKCKWKNLVNLYKGKE
SELMO_e_gw1.3.801.1_71.0_1 -KDKG---------FRRSADQCKCKWKNLVNRYKGKE
VITVI_GSVIVT01011168001_99.6_1 -KEKG---------YNRSADQCKCKWKNLVTRYKGCE
SELMO_fgenesh2_pg.C_scaffold_2 -RERG---------YARTSEQCKRKWKKLVSRYKVSE
SORBIwo_Sb06g020670.1_110.1_1 -RDQG---------FDRSPTMCTDKWRNLLKEFKKAR
ARATHwo_AT1G13450.1_122.2_1 -REKG---------FDRSPTMCTDKWRNLLKEFKKAK
PINTA_000037500-RA_35.5_1 -KGRG---------YGRSAETCVRKWRNLVRGCKN--
SORBIwo_Sb04g005902.1_89.4_1 -LNQG---------ISRTPAQCKSLWTSLVQKYEVSH
ZEAMAwo_GRMZM2G103315_P01_95.7 -LKQG---------ISRTPAQCKSLWTSLVQKYEESK
DROME_FBpp0288372_30.7_1 -QEYG---------YHRSPEEITTRIKNLKCFYNRLK
DROME_FBpp0086602_30.7_1 -QEYG---------YHRSPEEITTRIKNLKCFYNRLK
HOMSAwo_CCDS32410.1_Hs106_chr1 -RECG---------FLRTPEQCRTKFKSLQKSYRKVR
: .