HD

References:

Summary

Phylogenetic tree for Archeaplastida:

No tree was calculated yet.

TAP distribution:

The following table shows the distribution of HD over all species included in TAPscan. The values for e.g. a specific kingdom are shown in the tree below if you expand the tree for that kingdom.

List of species containing HD sorted by kingdom → clade → supergroup → order → family:

Archaeplastida (1716 proteins in 129 species)

0 46 14.18 10 10.18

core eudicots (882 proteins in 59 species)

0 37 15.21 12 8.75

core rosids (665 proteins in 45 species)

0 37 15.11 11 9.16

Rosales (94 proteins in 7 species)

5 29 13.43 12 7.61

Cannabaceae (8 proteins in 1 species)

8 8 8 8 0

Cannabis sativa (8 proteins)

Rosaceae (86 proteins in 6 species)

5 29 14.33 14 7.87

Fragaria vesca (12 proteins)

Malus domestica (29 proteins)

Prunus mume (5 proteins)

Prunus persica (7 proteins)

Pyrus bretschneideri (17 proteins)

Pyrus communis (16 proteins)

Fabales (81 proteins in 6 species)

8 20 13.5 13.5 4.61

Fabaceae (81 proteins in 6 species)

Cajanus cajan (12 proteins)

Cicer arietinum (8 proteins)

Glycine max (18 proteins)

Lotus japonicus (20 proteins)

Medicago truncatula (15 proteins)

Phaseolus vulgaris (8 proteins)

Malpighiales (63 proteins in 5 species)

0 32 12.6 8 10.36

Salicaceae (9 proteins in 1 species)

0 9 9 4.5 6.36

Salix purpurea

[Link will be activated as soon as the genome is published.]

Populus trichocarpa (9 proteins)

Euphorbiaceae (22 proteins in 3 species)

5 10 7.33 7 2.05

Jatropha curcas (5 proteins)

Manihot esculenta (10 proteins)

Ricinus communis (7 proteins)

Linaceae (32 proteins in 1 species)

32 32 32 32 0

Linum usitatissimum (32 proteins)

Cucurbitales (40 proteins in 3 species)

8 20 13.33 12 4.99

Cucurbitaceae (40 proteins in 3 species)

Citrullus lanatus (8 proteins)

Cucumis melo (12 proteins)

Cucumis sativus (20 proteins)

Sapindales (64 proteins in 3 species)

11 36 21.33 17 10.66

Meliaceae (36 proteins in 1 species)

36 36 36 36 0

Azadirachta indica (36 proteins)

Rutaceae (28 proteins in 2 species)

11 17 14 14 3

Citrus clementina (11 proteins)

Citrus sinensis (17 proteins)

Myrtales (9 proteins in 1 species)

9 9 9 9 0

Myrtaceae

Eucalyptus grandis (665 proteins)

Brassicales (291 proteins in 18 species)

7 37 17.12 10.5 10.07

Brassicaceae (263 proteins in 16 species)

7 37 17.53 10.5 10.44

Boechera stricta (9 proteins)

Capsella grandiflora (10 proteins)

Capsella rubella (8 proteins)

Aethionema arabicum (11 proteins)

Arabis alpina (7 proteins)

Arabidopsis lyrata (9 proteins)

Arabidopsis thaliana (7 proteins)

Brassica oleracea (24 proteins)

Brassica rapa (19 proteins)

Camelina sativa (37 proteins)

Eutrema salsugineum (10 proteins)

Leavenworthia alabamica (24 proteins)

Raphanus raphanistrum (32 proteins)

Raphanus sativus (36 proteins)

Sisymbrium irio (11 proteins)

Thellungiella parvula (9 proteins)

Caricaceae (8 proteins in 1 species)

8 8 8 8 0

Carica papaya (8 proteins)

Cleomaceae (20 proteins in 1 species)

20 20 20 20 0

Tarenaya hassleriana (20 proteins)

Malvales (23 proteins in 2 species)

4 19 11.5 11.5 7.5

Malvaceae (23 proteins in 2 species)

Gossypium raimondii (19 proteins)

Theobroma cacao (4 proteins)

basal rosids (25 proteins in 3 species)

0 13 8.33 6 5.1

Vitales (7 proteins in 1 species)

7 7 7 7 0

Vitaceae

Vitis vinifera (25 proteins)

Saxifragales

Crassulaceae

Kalanchoe laxiflora

[Link will be activated as soon as the genome is published.]

Caryophyllales (18 proteins in 2 species)

5 13 9 9 4

Amaranthaceae (13 proteins in 1 species)

13 13 13 13 0

Amaranthus hypochondriacus (13 proteins)

Chenopodiaceae (5 proteins in 1 species)

5 5 5 5 0

Beta vulgaris (5 proteins)

asterids (192 proteins in 11 species)

11 27 17.45 15 5.58

Solanales (118 proteins in 7 species)

11 27 16.86 14 6.22

Solanaceae (118 proteins in 7 species)

Capsicum annuum (spp. glabriusculum) (12 proteins)

Capsicum annuum (spp. zunla) (11 proteins)

Nicotiana benthamiana (27 proteins)

Solanum lycopersicum (15 proteins)

Solanum melongena (13 proteins)

Solanum pennellii (14 proteins)

Solanum tuberosum (26 proteins)

Gentianales (13 proteins in 1 species)

13 13 13 13 0

Rubiaceae

Coffea canephora (192 proteins)

Lamiales (37 proteins in 2 species)

17 20 18.5 18.5 1.5

Phrymaceae (17 proteins in 1 species)

17 17 17 17 0

Mimulus guttatus (17 proteins)

Lentibulariaceae (20 proteins in 1 species)

20 20 20 20 0

Utricularia gibba (20 proteins)

Ericales (24 proteins in 1 species)

24 24 24 24 0

Actinidiaceae

Actinidia chinensis (192 proteins)

eudicots (20 proteins in 2 species)

9 11 20 10 10.05

basal eudicots (20 proteins in 2 species)

Ranunculales (9 proteins in 1 species)

9 9 INF 9 INF

Ranunculaceae

Aquilegia coerulea (20 proteins)

Proteales (11 proteins in 1 species)

Nelumbonaceae

Nelumbo nucifera (20 proteins)

Liliopsida (429 proteins in 22 species)

7 38 22.58 19 9.34

commelinids (373 proteins in 19 species)

7 38 23.31 20 10.17

Poales (273 proteins in 15 species)

7 38 22.75 14 10.9

Poaceae (273 proteins in 15 species)

Brachypodium stacei (10 proteins)

Panicum virgatum (32 proteins)

Phyllostachys heterocycla (26 proteins)

Setaria viridis (7 proteins)

Aegilops tauschii (28 proteins)

Brachypodium distachyon (12 proteins)

Eragrostis tef (38 proteins)

Hordeum vulgare (8 proteins)

Oryza sativa (spp. indica) (23 proteins)

Oryza sativa (spp. japonica) (14 proteins)

Setaria italica (8 proteins)

Sorghum bicolor (9 proteins)

Triticum aestivum (10 proteins)

Triticum urartu (28 proteins)

Zea mays (20 proteins)

Zingiberales (46 proteins in 2 species)

17 29 23 23 6

Musaceae (46 proteins in 2 species)

Musa acuminata (17 proteins)

Musa balbisiana (29 proteins)

Arecales (54 proteins in 2 species)

26 28 27 27 1

Arecaceae (54 proteins in 2 species)

Elaeis guineensis (26 proteins)

Phoenix dactylifera (28 proteins)

Asparagales (19 proteins in 1 species)

19 19 19 19 0

Orchidaceae

Phalaenopsis equestris (19 proteins)

Alismatales (37 proteins in 2 species)

18 19 18.5 18.5 0.5

Zosteraceae (19 proteins in 1 species)

19 19 19 19 0

Zostera marina (19 proteins)

Araceae (18 proteins in 1 species)

18 18 18 18 0

Spirodela polyrhiza (18 proteins)

basal angiosperms (6 proteins in 1 species)

6 6 6 6 0

Amborellales

Amborellaceae

Amborella trichopoda (6 proteins)

Acrogymnospermae (81 proteins in 4 species)

10 42 20.25 14.5 12.7

Coniferophyta (71 proteins in 3 species)

14 42 23.67 15 12.97

Pinales (71 proteins in 3 species)

Pinaceae (71 proteins in 3 species)

Picea abies (14 proteins)

Picea glauca (Transcriptome; 15 proteins)

Pinus taeda (42 proteins)

Ginkgophyta (10 proteins in 1 species)

10 10 10 10 0

Ginkgoales

Ginkgoaceae

Ginkgo biloba (10 proteins)

Moniliformopses (44 proteins in 3 species)

0 19 44 12.5 33.76

Polypodiidae (44 proteins in 3 species)

Polypodiales (19 proteins in 1 species)

Dennstaedtiaceae (19 proteins in 1 species)

Microlepia marginata (Transcriptome)

[Link will be activated as soon as the genome is published.]

Pteridium aquilinum (Transcriptome; 19 proteins)

Salviniales (25 proteins in 2 species)

10 15 INF 12.5 INF

Azollaceae (15 proteins in 1 species)

Azolla filiculoides (15 proteins)

Salviniaceae (10 proteins in 1 species)

Salvinia cucullata (10 proteins)

Lycopodiidae (6 proteins in 1 species)

6 6 6 6 0

Lycopodiales

Selaginellales

Selaginellaceae

Selaginella moellendorffii (6 proteins)

Bryopsida (61 proteins in 3 species)

0 46 20.33 7.5 18.8

Sphagnopsida

Sphagnales

Sphagnaceae

Sphagnum fallax

[Link will be activated as soon as the genome is published.]

Dicranidae (5 proteins in 1 species)

5 5 5 5 0

Dicranales

Ditrichaceae

Ceratodon purpureus (Transcriptome; 5 proteins)

Funariidae (56 proteins in 2 species)

10 46 28 28 18

Funariales (56 proteins in 2 species)

Funariaceae (56 proteins in 2 species)

Physcomitrella patens (10 proteins)

Funaria hygrometrica (Transcriptome; 46 proteins)

Marchantiophyta (12 proteins in 2 species)

4 8 12 6 6.32

Marchantiopsida (12 proteins in 2 species)

Marchantiales (12 proteins in 2 species)

Marchantiaceae (12 proteins in 2 species)

Marchantia polymorpha (Transcriptome; 8 proteins)

Marchantia polymorpha (4 proteins)

Streptophyta ZCC grade (75 proteins in 8 species)

1 41 10.71 4.5 12.63

Zygnemophyceae (45 proteins in 3 species)

1 41 15 3 18.4

Desmidiales (1 protein in 1 species)

1 1 1 1 0

Peniaceae

Penium margaritaceum (Transcriptome; 45 proteins)

Zygnematales (44 proteins in 2 species)

3 41 22 22 19

Zygnemataceae (44 proteins in 2 species)

Spirogyra pratensis (Transcriptome; 3 proteins)

Spirogyra sp. (41 proteins)

Coleochaetophyceae (11 proteins in 3 species)

1 6 3.67 4 2.05

Coleochaetales (11 proteins in 3 species)

Chaetosphaeridiaceae (4 proteins in 1 species)

4 4 4 4 0

Chaetosphaeridium globosum (Transcriptome; 4 proteins)

Coleochaetaceae (7 proteins in 2 species)

1 6 3.5 3.5 2.5

Coleochaete orbicularis (Transcriptome; 6 proteins)

Coleochaete sp. (Transcriptome; 1 protein)

Charophyceae (19 proteins in 2 species)

5 14 19 9.5 10.51

Charales (19 proteins in 2 species)

Characeae (19 proteins in 2 species)

Chara braunii (5 proteins)

Nitella hyalina (Transcriptome; 14 proteins)

Streptophyta KCM grade (14 proteins in 2 species)

2 12 7 7 5

Klebsormidiophyceae (12 proteins in 1 species)

12 12 12 12 0

Klebsormidiales

Klebsormidiaceae

Klebsormidium flaccidum (12 proteins)

Chlorokybophyceae (2 proteins in 1 species)

2 2 2 2 0

Chlorokybales

Chlorokybaceae

Chlorokybus atmophyticus (Transcriptome; 2 proteins)

Chlorophyta (32 proteins in 10 species)

0 7 2.67 2.5 2.09

Chlorophyceae (3 proteins in 2 species)

0 2 1 1 0.82

Chlamydomonadales (3 proteins in 2 species)

Dunaliellaceae

Dunaliella salina

[Link will be activated as soon as the genome is published.]

Volvocaceae (3 proteins in 2 species)

Gonium pectorale (1 protein)

Volvox carteri (2 proteins)

Trebouxiophyceae (3 proteins in 2 species)

0 2 1 1 0.82

Chlorellales (2 proteins in 1 species)

0 2 1 1 1

Chlorellaceae

Chlorella sp. NC64A (3 proteins)

Trebouxiophyceae incertae sedis (1 protein in 1 species)

1 1 1 1 0

Coccomyxaceae

Coccomyxa subellipsoidea C-169 (3 proteins)

prasinophytes (26 proteins in 6 species)

3 7 4.33 3.5 1.6

Mamiellales (26 proteins in 6 species)

Bathycoccaceae (13 proteins in 4 species)

3 4 3.25 3 0.43

Bathycoccus prasinos (3 proteins)

Ostreococcus lucimarinus (4 proteins)

Ostreococcus tauri (3 proteins)

Ostreococcus sp. RCC809 (3 proteins)

Mamiellaceae (13 proteins in 2 species)

6 7 6.5 6.5 0.5

Micromonas pusilla CCMP1545 (7 proteins)

Micromonas sp. RCC299 (6 proteins)

Rhodophyta (45 proteins in 11 species)

1 10 4.5 4 2.54

Florideophyceae (11 proteins in 3 species)

1 6 3.67 4 2.05

Corallinales (4 proteins in 1 species)

4 4 4 4 0

Corallinaceae

Calliarthron tuberculosum (11 proteins)

Gigartinales (1 protein in 1 species)

1 1 1 1 0

Gigartinaceae

Chondrus crispus (11 proteins)

Gracilariales (6 proteins in 1 species)

6 6 6 6 0

Gracilariaceae

Gracilariopsis chorda (11 proteins)

Bangiophyceae (22 proteins in 4 species)

3 10 7.33 4.5 3.41

Porphyridiales (16 proteins in 2 species)

6 10 8 8 2

Porphyridiaceae (16 proteins in 2 species)

Porphyridium purpureum (10 proteins)

Porphyridium cruentum (Transcriptome; 6 proteins)

Bangiales (6 proteins in 2 species)

3 3 6 3 3

Bangiaceae (6 proteins in 2 species)

Pyropia yezoensis (3 proteins)

Porphyra umbilicalis (3 proteins)

Cyanidiophyceae (12 proteins in 4 species)

1 5 3 3 1.58

Cyanidiales (12 proteins in 4 species)

Cyanidiaceae (12 proteins in 4 species)

Galdieria phlegrea (1 protein)

Cyanidium caldarium (5 proteins)

Cyanidioschyzon merolae (4 proteins)

Galdieria sulphuraria (2 proteins)

Glaucophyta (9 proteins in 1 species)

9 9 9 9 0

Glaucocystophyceae

Cyanophoraceae

Cyanophora paradoxa (9 proteins)

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A list of species letter codes included in the protein names can be found here (opens in new tab).